diff --git a/benchmark/eval_analysis_v2.R b/benchmark/eval_analysis_v2.R new file mode 100755 index 000000000..82af8ee08 --- /dev/null +++ b/benchmark/eval_analysis_v2.R @@ -0,0 +1,107 @@ +#!/usr/bin/env Rscript + +library(sqldf) +library(plyr) +library(plot3D) +library(ggplot2) + + +args = commandArgs(trailingOnly=TRUE) +print(args) +if (2 != length(args)) { + print("Requires 2 parameters)") + q() +} + +file_db = args[1] +folder_out = args[2] +print(file_db) + +make_facet_label <- function(variable, value){ + return(paste0(value, " KiB")) +} + + +#connection = dbConnect(SQLite(), dbname='results.ddnime.db') +print(file_db) +connection = dbConnect(SQLite(), dbname=file_db) + +dbdata = dbGetQuery(connection,'select * from p' ) +dbdata[,"blocksize"] = dbdata$t + + +summary(dbdata) + +nn_lab <- sprintf(fmt="NN=%d", unique(dbdata$nn)) +names(nn_lab) <- unique(dbdata$nn) +ppn_lab <- sprintf(fmt="PPN=%d", unique(dbdata$ppn)) +names(ppn_lab) <- unique(dbdata$ppn) +breaks <- c(unique(dbdata$blocksize)) + + +dbdata$lab_access <- dbdata$access +dbdata$lab_access[dbdata$lab_access == "write"] = "Write" +dbdata$lab_access[dbdata$lab_access == "read"] = "Read" + + + + +for (scale in c("linear", "logarithmic")) { + + p = ggplot(data=dbdata, aes(x=nn, y=bwMiB, colour=as.factor(blocksize/1024), group=blocksize), ymin=0) + + #aes(x=nn, y=bwMiB) + + ggtitle("POSIX independent random access to a shared file with IOR") + + facet_grid(ppn ~ lab_access, labeller = labeller(nn = as_labeller(nn_lab), ppn = as_labeller(ppn_lab))) + + xlab("Nodes") + + ylab("Performance in MiB/s") + + theme(axis.text.x=element_text(angle=90, hjust=0.95, vjust=0.5)) + + theme(legend.position="bottom") + + #scale_x_continuous(breaks = c(unique(data$nn))) + + scale_x_log10(breaks = c(unique(dbdata$nn))) + + scale_color_manual(name="Blocksize in KiB: ", values=c('#999999','#E69F00', '#56B4E9', '#000000'), breaks=sort(unique(dbdata$blocksize)/1024)) + + #stat_summary(fun.y="median", geom="line", aes(group=factor(blocksize))) + + stat_summary(fun.y="mean", geom="line", aes(group=factor(blocksize))) + + #geom_boxplot() + geom_point() + #geom_point(data=dbdata, aes(x=nn, y=PortRcvData), colour='red') + + #geom_point(data=dbdata, aes(x=nn, y=PortXmitData), colour='blue') + + if ( "logarithmic" == scale ) { + p = p + scale_y_log10() + } + + filename_eps = sprintf("%s/performance_%s.eps", folder_out, scale) + filename_png = sprintf("%s/performance_%s.png", folder_out, scale) + ggsave(filename_png, width = 10, height = 8) + ggsave(filename_eps, width = 10, height = 8) + #system(sprintf("epstopdf %s", filename_eps)) + system(sprintf("rm %s", filename_eps)) + + p = ggplot(data=dbdata, ymin=0) + + aes(x=nn, y=(PortXmitData + PortRcvData) * 4 / ppn, colour=as.factor(blocksize/1024), group=blocksize) + + #aes(x=nn, y=bwMiB) + + ggtitle('Infiniband throughput (PortRcvData and PortXmitData by "perfquery -x")') + + facet_grid(ppn ~ lab_access, labeller = labeller(nn = as_labeller(nn_lab), ppn = as_labeller(ppn_lab))) + + xlab("Nodes") + + ylab("Performance in MiB/s") + + theme(axis.text.x=element_text(angle=90, hjust=0.95, vjust=0.5)) + + theme(legend.position="bottom") + + #scale_x_continuous(breaks = c(unique(data$nn))) + + scale_x_log10(breaks = c(unique(dbdata$nn))) + + scale_color_manual(name="Blocksize in KiB: ", values=c('#999999','#E69F00', '#56B4E9', '#000000'), breaks=sort(unique(dbdata$blocksize)/1024)) + + stat_summary(fun.y="mean", geom="line", aes(group=factor(blocksize))) + + #geom_point(data=dbdata, aes(x=nn, y=PortXmitData), colour='blue') + geom_point() + + if ( "logarithmic" == scale ) { + p = p + scale_y_log10() + } + + filename_eps = sprintf("%s/ib_%s.eps", folder_out, scale) + filename_png = sprintf("%s/ib_%s.png", folder_out, scale) + ggsave(filename_png, width = 10, height = 8) + ggsave(filename_eps, width = 10, height = 8) + #system(sprintf("epstopdf %s", filename_eps)) + system(sprintf("rm %s", filename_eps)) + +} diff --git a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt deleted file mode 100644 index 869915f0a..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt +++ /dev/null @@ -1,133 +0,0 @@ -+ /opt/ddn/mvapich/bin/mpiexec -ppn 8 -np 120 --hosts isc17-c02,isc17-c03,isc17-c04,isc17-c05,isc17-c06,isc17-c07,isc17-c08,isc17-c09,isc17-c12,isc17-c13,isc17-c14,isc17-c15,isc17-c18,isc17-c22,isc17-c01 -wdir /esfs/jtacquaviva/git/ddn-ime-evaluation/benchmark -genv MV2_NUM_HCAS 1 -genv MV2_CPU_BINDING_LEVEL core -genv MV2_CPU_BINDING_POLICY scatter ./ior_wrapper.sh '-i 1 -s 1 -t 10485760 -b 100663296000 -D 60 -O stoneWallingWearOut=1 -a POSIX -g -H -z -o /esfs/jtacquaviva/testfiles/sharedread15/file -r -E -k -O summaryFile=./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -O summaryFormat=JSON ' ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network -+ tee -a ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to 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./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -ior WARNING: hints not available in POSIX. Using value of 0. -ior ERROR: unable to statfs() file system, errno 2, No such file or directory (utilities.c:380) -[cli_0]: aborting job: -application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0 -[mpiexec@isc17-c01] HYDU_sock_write (utils/sock/sock.c:286): write error (Bad file descriptor) -[mpiexec@isc17-c01] HYD_pmcd_pmiserv_send_signal (pm/pmiserv/pmiserv_cb.c:169): unable to write data to proxy -[mpiexec@isc17-c01] ui_cmd_cb (pm/pmiserv/pmiserv_pmci.c:79): unable to send signal downstream -[mpiexec@isc17-c01] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status -[mpiexec@isc17-c01] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event -[mpiexec@isc17-c01] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion -+ set +x diff --git a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json deleted file mode 100644 index a09b8d78b..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json +++ /dev/null @@ -1,9 +0,0 @@ -{ - "Version": "3.2.0", - "Began": "Wed Nov 14 23:01:43 2018", - "Command line": "/esfs/jtacquaviva/software/install/ior/git-20181107/bin/ior -i 1 -s 1 -t 10485760 -b 100663296000 -D 60 -O stoneWallingWearOut=1 -a POSIX -g -H -z -o /esfs/jtacquaviva/testfiles/sharedread15/file -r -E -k -O summaryFile=./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -O summaryFormat=JSON", - "Machine": "Linux isc17-c02", - "tests": [ - { - "TestID": 0, - "StartTime": "Wed Nov 14 23:01:43 2018" \ No newline at end of file diff --git a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43316-LABEL:start.txt b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43316-LABEL:start.txt deleted file mode 100644 index 12cbc8259..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43316-LABEL:start.txt +++ /dev/null @@ -1,56 +0,0 @@ -TIMESTAMP 1542232899 -# Port extended counters: Lid 26 port 1 (CapMask: 0x5A00) -PortSelect:......................1 -CounterSelect:...................0x0000 -PortXmitData:....................2927919535524 -PortRcvData:.....................3556451332720 -PortXmitPkts:....................13038797410 -PortRcvPkts:.....................13099371430 -PortUnicastXmitPkts:.............13035833045 -PortUnicastRcvPkts:..............13040357355 -PortMulticastXmitPkts:...........2964365 -PortMulticastRcvPkts:............59014075 -Inter-| Receive | Transmit - face |bytes packets errs drop fifo frame compressed multicast|bytes packets errs drop fifo colls carrier 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b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43318-LABEL:start.txt deleted file mode 100644 index 8092bb071..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43318-LABEL:start.txt +++ /dev/null @@ -1,56 +0,0 @@ -TIMESTAMP 1542232899 -# Port extended counters: Lid 26 port 1 (CapMask: 0x5A00) -PortSelect:......................1 -CounterSelect:...................0x0000 -PortXmitData:....................2927919535524 -PortRcvData:.....................3556451332720 -PortXmitPkts:....................13038797410 -PortRcvPkts:.....................13099371430 -PortUnicastXmitPkts:.............13035833045 -PortUnicastRcvPkts:..............13040357355 -PortMulticastXmitPkts:...........2964365 -PortMulticastRcvPkts:............59014075 -Inter-| Receive | Transmit - face |bytes packets errs drop fifo frame compressed multicast|bytes packets errs drop fifo colls carrier 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