From befd41bf496edc07a15e2317786c1f824a513bb6 Mon Sep 17 00:00:00 2001 From: Eugen Betke Date: Thu, 6 Dec 2018 19:57:20 +0100 Subject: [PATCH] Makedb supports iterations --- benchmark/mkdb.py | 27 ++-- ...5-PPN:8-API:POSIX-T:10485760-TYPE:read.txt | 133 ------------------ ...:8-API:POSIX-T:10485760-TYPE:read.txt.json | 9 -- .../HOST:isc17-c01-PID:43316-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43317-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43318-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43319-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43320-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43321-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43322-LABEL:start.txt | 56 -------- .../HOST:isc17-c01-PID:43323-LABEL:start.txt | 56 -------- .../HOST:isc17-c02-PID:10649-LABEL:start.txt | 56 -------- .../HOST:isc17-c02-PID:10649-LABEL:stop.txt | 56 -------- .../HOST:isc17-c02-PID:10650-LABEL:start.txt | 56 -------- 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benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c22-PID:39752-LABEL:start.txt diff --git a/benchmark/mkdb.py b/benchmark/mkdb.py index 66b96075f..cc6c55f69 100755 --- a/benchmark/mkdb.py +++ b/benchmark/mkdb.py @@ -34,13 +34,11 @@ def splitFn(fn:str): def parseIorOutput(fn): selffn = fn + ".json" - res = dict() + res = list() with open(selffn) as f: data = json.load(f) #print(json.dumps(data, indent=4)) - res.update(data['tests'][0]['Results'][0][0]) - #print(data['tests'][0]['Results'][0][0]) - #print(res) + res = data['tests'][0]['Results'] return res @@ -126,7 +124,7 @@ class DBWriter: cols = ["%s %s" % (k,self.map[type(v)]) for k,v in data.items()] colnames = ','.join(cols) print(colnames) - query = 'CREATE TABLE p (%s, primary key(filename))' % colnames + query = 'CREATE TABLE p (%s, primary key(filename,iteration))' % colnames try: self.conn.execute(query) except Exception as e: @@ -158,14 +156,17 @@ def main(): for filename in glob.glob(folder + "/*.txt"): print("Parsing " + filename) data = dict() - data.update(splitFn(filename)) - data.update(parseSysCounters(filename)) - data.update(parseIorOutput(filename)) - if not tabexists: - print(data) - db.create(data) - tabexists = True - db.insert(data) + ior_result = parseIorOutput(filename) + for i in range(0, len(ior_result)): + data.update(splitFn(filename)) + data.update(parseSysCounters(filename)) + data.update(ior_result[i][0]) + data['iteration'] = i + if not tabexists: + print(data) + db.create(data) + tabexists = True + db.insert(data) print(data) diff --git a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt deleted file mode 100644 index 869915f0a..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt +++ /dev/null @@ -1,133 +0,0 @@ -+ /opt/ddn/mvapich/bin/mpiexec -ppn 8 -np 120 --hosts isc17-c02,isc17-c03,isc17-c04,isc17-c05,isc17-c06,isc17-c07,isc17-c08,isc17-c09,isc17-c12,isc17-c13,isc17-c14,isc17-c15,isc17-c18,isc17-c22,isc17-c01 -wdir /esfs/jtacquaviva/git/ddn-ime-evaluation/benchmark -genv MV2_NUM_HCAS 1 -genv MV2_CPU_BINDING_LEVEL core -genv MV2_CPU_BINDING_POLICY scatter ./ior_wrapper.sh '-i 1 -s 1 -t 10485760 -b 100663296000 -D 60 -O stoneWallingWearOut=1 -a POSIX -g -H -z -o /esfs/jtacquaviva/testfiles/sharedread15/file -r -E -k -O summaryFile=./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -O summaryFormat=JSON ' ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network -+ tee -a ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json 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-Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -Writing output to ./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -ior WARNING: hints not available in POSIX. Using value of 0. -ior ERROR: unable to statfs() file system, errno 2, No such file or directory (utilities.c:380) -[cli_0]: aborting job: -application called MPI_Abort(MPI_COMM_WORLD, -1) - process 0 -[mpiexec@isc17-c01] HYDU_sock_write (utils/sock/sock.c:286): write error (Bad file descriptor) -[mpiexec@isc17-c01] HYD_pmcd_pmiserv_send_signal (pm/pmiserv/pmiserv_cb.c:169): unable to write data to proxy -[mpiexec@isc17-c01] ui_cmd_cb (pm/pmiserv/pmiserv_pmci.c:79): unable to send signal downstream -[mpiexec@isc17-c01] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status -[mpiexec@isc17-c01] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:198): error waiting for event -[mpiexec@isc17-c01] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion -+ set +x diff --git a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json deleted file mode 100644 index a09b8d78b..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json +++ /dev/null @@ -1,9 +0,0 @@ -{ - "Version": "3.2.0", - "Began": "Wed Nov 14 23:01:43 2018", - "Command line": "/esfs/jtacquaviva/software/install/ior/git-20181107/bin/ior -i 1 -s 1 -t 10485760 -b 100663296000 -D 60 -O stoneWallingWearOut=1 -a POSIX -g -H -z -o /esfs/jtacquaviva/testfiles/sharedread15/file -r -E -k -O summaryFile=./output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt.json -O summaryFormat=JSON", - "Machine": "Linux isc17-c02", - "tests": [ - { - "TestID": 0, - "StartTime": "Wed Nov 14 23:01:43 2018" \ No newline at end of file diff --git a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43316-LABEL:start.txt b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43316-LABEL:start.txt deleted file mode 100644 index 12cbc8259..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43316-LABEL:start.txt +++ /dev/null @@ -1,56 +0,0 @@ -TIMESTAMP 1542232899 -# Port extended counters: Lid 26 port 1 (CapMask: 0x5A00) -PortSelect:......................1 -CounterSelect:...................0x0000 -PortXmitData:....................2927919535524 -PortRcvData:.....................3556451332720 -PortXmitPkts:....................13038797410 -PortRcvPkts:.....................13099371430 -PortUnicastXmitPkts:.............13035833045 -PortUnicastRcvPkts:..............13040357355 -PortMulticastXmitPkts:...........2964365 -PortMulticastRcvPkts:............59014075 -Inter-| Receive | Transmit - face |bytes packets errs drop fifo frame compressed multicast|bytes packets errs drop fifo colls carrier compressed - eno1: 46776390100 65909191 0 0 0 0 0 7886400 32038420235 32312392 0 0 0 0 0 0 - eno2: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - eno3: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - eno4: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - lo: 4280448742 7782206 0 0 0 0 0 0 4280448742 7782206 0 0 0 0 0 0 - ib3: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - ib2: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - ib1: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - ib0: 4743066717 75939049 0 0 0 0 0 0 2223744551 17719649 0 11 0 0 0 0 -docker0: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 - total used free shared buff/cache available -Mem: 64217 11796 50316 1433 2104 50350 -Swap: 13939 0 13939 -users: 10 -max_cached_mb: 32108 -used_mb: 0 -unused_mb: 32108 -reclaim_count: 109 -cpu 140477582 323 53612450 4528317430 25696913 0 424593 0 0 0 -cpu0 9579602 0 5145957 277161759 3814266 0 413831 0 0 0 -cpu1 9155444 7 4111161 280478714 3120352 0 370 0 0 0 -cpu2 9301885 200 4636797 279831521 2914340 0 1621 0 0 0 -cpu3 9242564 46 3943043 281688612 1963332 0 306 0 0 0 -cpu4 9756381 14 3980288 280603550 2408346 0 1205 0 0 0 -cpu5 9274057 11 3546808 281789106 2265631 0 180 0 0 0 -cpu6 9530887 3 3794494 281519189 1928280 0 1379 0 0 0 -cpu7 8571380 9 3441274 283847945 1018286 0 225 0 0 0 -cpu8 8292858 1 2754342 285081967 667724 0 1416 0 0 0 -cpu9 8051790 7 2643180 285623616 555847 0 159 0 0 0 -cpu10 8290323 0 2479080 285402395 634528 0 1134 0 0 0 -cpu11 8376150 6 2620867 284591226 1287993 0 148 0 0 0 -cpu12 8443475 0 2642135 285100863 632018 0 1111 0 0 0 -cpu13 7898847 7 2555109 285883234 536047 0 152 0 0 0 -cpu14 8207705 0 2643204 285318620 644569 0 1221 0 0 0 -cpu15 8504226 5 2674705 284395106 1305349 0 127 0 0 0 -intr 7375278743 47 0 0 0 0 0 0 0 1 4 1494933 0 0 0 0 0 0 0 0 0 0 0 33 199 0 0 0 0 0 0 0 0 0 0 0 0 6711532 0 0 0 2897494 0 0 0 128 17756414 127022 0 88099257 737 626370355 368 380 373390 375 358 1521783258 354 366 1106830408 1391080787 347 1324568466 345 0 97 3561949 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 19567302 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 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b/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43317-LABEL:start.txt deleted file mode 100644 index e2b2b383b..000000000 --- a/benchmark/output_v2/COUNT:1-NN:15-PPN:8-API:POSIX-T:10485760-TYPE:read.txt_network/HOST:isc17-c01-PID:43317-LABEL:start.txt +++ /dev/null @@ -1,56 +0,0 @@ -TIMESTAMP 1542232899 -# Port extended counters: Lid 26 port 1 (CapMask: 0x5A00) -PortSelect:......................1 -CounterSelect:...................0x0000 -PortXmitData:....................2927919518113 -PortRcvData:.....................3556451316910 -PortXmitPkts:....................13038797256 -PortRcvPkts:.....................13099371274 -PortUnicastXmitPkts:.............13035832891 -PortUnicastRcvPkts:..............13040357200 -PortMulticastXmitPkts:...........2964365 -PortMulticastRcvPkts:............59014074 -Inter-| Receive | Transmit - face |bytes packets errs drop fifo frame compressed multicast|bytes packets errs drop fifo colls carrier 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