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ddn-ime-evaluation
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ddn-ime-evaluation/mkdb.py

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Converter of output files to sqlite3 database
2018-10-04 14:49:15 +00:00
#!/usr/bin/env python3
import sys
import os
import re
import sqlite3
import traceback
import glob
import pprint
__version = "0.8"
__license__ = "GPL"
__author__ = "Eugen"
__date__ = "2017"
def parse(filename, conn):
exptype = 0
data = {}
ior_type = "ddn"
with open(filename, "r") as f:
data["filename"] = filename
iotype = "write"
for line in f:
#./output/PROG:benchtool#NN:2#PPN:2#TYPE:ind#CHUNKED:notset#FILLED:notset#UNLIMITED:notset#output:10:500:20:100.txt
#output COUNT:2 TAG:20171 #PROG:ior# NN:12# PPN:2# TYPE:ind# IFACE:mpio# FS:lustre# CHUNKED:notset# FILLED:notset# UNLIMITED:notset #output:100:16:64:4.txt
m = re.match("COUNT:([0-9]+)#TAG:([0-9]+_[0-9]+)#PROG:([\w]+)#NN:([0-9]+)#PPN:([0-9]+)#TYPE:([\w]+)#IFACE:([\w]+)#FS:([\w]+)#CHUNKED:([\w]+)#FILLED:([\w]+)#UNLIMITED:([\w]+)#output:([0-9]+):([0-9]+):([0-9]+):([0-9]+).txt", os.path.basename(filename))
if (m):
data["count"] = int(m.group(1))
data["tag"] = m.group(2)
data["app"] = m.group(3)
data["nn"] = int(m.group(4))
data["ppn"] = int(m.group(5))
data["type"] = m.group(6)
data["iface"] = m.group(7)
data["fs"] = m.group(8)
data["chunked"] = m.group(9)
data["filled"] = m.group(10)
data["unlimited"] = m.group(11)
data["t"] = int(m.group(12))
data["x"] = int(m.group(13))
data["y"] = int(m.group(14))
data["z"] = int(m.group(15))
else:
print('couldn\'t parse', os.path.basename(filename))
print(data)
quit()
#access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
#------ --------- ---------- --------- -------- -------- -------- -------- ----
#write 1051.96 100.00 100.00 0.002366 0.006890 0.000023 0.009283 0
#read 71.04 100.00 100.00 0.000605 0.136745 0.000111 0.137470 0
#remove - - - - - - 0.005926 0
#Max Write: 1051.96 MiB/sec (1103.06 MB/sec)
#Max Read: 71.04 MiB/sec (74.49 MB/sec)
#Summary of all tests:
#Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggsize API RefNum
#write 1051.96 1051.96 1051.96 0.00 0.00928 0 1 1 1 1 1 1 0 0 100 102400 102400 10240000 POSIX 0
#read 71.04 71.04 71.04 0.00 0.13747 0 1 1 1 1 1 1 0 0 100 102400 102400 10240000 POSIX 0
#m = re.match("read[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s]+
#([0-9.]+)[\s].", line)
if ('ior' == data['app']):
m = re.match("Command line used: .* -s[\s]+([0-9.]+)[\s]+-t[\s]+([0-9.]+)[\s]+-b[\s]+([0-9.]+)[\s]+-o.*", line)
if (m):
data["fsize"] = float(m.group(1)) * float(m.group(3)) * data["ppn"] * data["nn"]
#print(data["fsize"], float(m.group(1)), float(m.group(3)), data["nn"], data["ppn"])
#m = re.match("[\s]+aggregate filesize = ([0-9.]+)[\s]+.*", line)
m = re.match("[\s]+aggregate filesize = (.*)", line)
if (m):
data["fsize_ctl"] = m.group(1)
m = re.match("read[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]*$", line)
if (m):
data["read"] = float(m.group(1))
data["ropen"] = float(m.group(4))
data["rio"] = float(m.group(5))
data["rclose"] = float(m.group(6))
data["rtotal"] = float(m.group(7))
ior_type = "default"
m = re.match("write[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]*$", line)
if (m):
data["write"] = float(m.group(1))
data["wopen"] = float(m.group(4))
data["wio"] = float(m.group(5))
data["wclose"] = float(m.group(6))
data["wtotal"] = float(m.group(7))
ior_type = "default"
if ("ddn" == ior_type):
m = re.match("read[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s].*$", line)
if (m):
data["read"] = float(m.group(1))
data["ropen"] = -1
data["rio"] = data["fsize"] / 1024 / 1024 / data["read"] # approximation
data["rclose"] = -1
data["rtotal"] = data["fsize"] / 1024 / 1024 / data["read"]
m = re.match("write[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s]+([0-9.]+)[\s].*$", line)
if (m):
data["write"] = float(m.group(1))
data["wopen"] = -1
data["wio"] = data["fsize"] / 1024 / 1024 / data["write"] # approximation
data["wclose"] = -1
data["wtotal"] = data["fsize"] / 1024 / 1024 / data["write"]
elif('benchtool' == data['app']):
m = re.match("benchmark:write[\s]*Open time[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*secs ", line)
if (m):
data["wopen"] = float(m.group(2))
m = re.match("benchmark:write[\s]*I/O Performance \(w/o open/close\)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*MiB/s ", line)
if (m):
data["write"] = float(m.group(2))
m = re.match("benchmark:write[\s]*Close time[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*secs ", line)
if (m):
data["wclose"] = float(m.group(2))
data["wtotal"] = data["wopen"] + data["wclose"] + data["wio"]
m = re.match("benchmark:write[\s]*I/O time[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*secs ", line)
if (m):
data["wio"] = float(m.group(2))
m = re.match("benchmark:read[\s]*Open time[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*secs ", line)
if (m):
data["ropen"] = float(m.group(2))
m = re.match("benchmark:read[\s]*I/O Performance \(w/o open/close\)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*MiB/s ", line)
if (m):
data["read"] = float(m.group(2))
m = re.match("benchmark:read[\s]*Close time[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*secs ", line)
if (m):
data["rclose"] = float(m.group(2))
data["rtotal"] = data["ropen"] + data["rclose"] + data["rio"]
m = re.match("benchmark:read[\s]*I/O time[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*([0-9.]+)[\s]*secs ", line)
if (m):
data["rio"] = float(m.group(2))
m = re.match("Datasize[\s]+([0-9.]+)[\s]+bytes.*", line)
if (m):
data["fsize"] = float(m.group(1))
data["fsize_ctl"] = m.group(1)
elif('iozone' == data['app']):
print("App is not supported:", app)
quit()
m = re.match("\s+\w+\s+see\w* throughput for \d readers\s+=\s+([0-9.]+)\s+kB/sec", line)
if (m):
data['read'] = float(m.group(1)) / 1024
m = re.match("\s+\w+\s+see\w* throughput for \d initial writers\s+=\s+([0-9.]+)\s+kB/sec", line)
if (m):
data['write'] = float(m.group(1)) / 1024
else:
print("Error: Unknow app", app)
quit()
if len(data) == 28:
print("Success")
columns = ", ".join(data.keys())
placeholders = ':' + ', :'.join(data.keys())
try:
conn.execute("INSERT INTO p (%s) VALUES (%s)" %(columns, placeholders), data)
except sqlite3.IntegrityError as e:
print("Already imported")
else:
print("Error in file %s with tuples %s size %d"% (filename, data, len(data)))
exptype += 1;
#parse("./results/iozone/NP:2/C:0/T:100/output_app.txt", conn, style)
assert(3 == len(sys.argv))
folder = sys.argv[1]
dbname = sys.argv[2]
conn = sqlite3.connect(dbname)
try:
tbl = 'CREATE TABLE p (\
filename text, \
count int, \
tag text, \
app text, \
nn int, \
ppn int, \
type text, \
iface text, \
fs text, \
chunked boolean, \
filled boolean, \
unlimited boolean, \
t float, \
x float, \
y float, \
z float, \
fsize float, \
fsize_ctl text, \
ropen float, \
rio float, \
rclose float, \
rtotal float, \
read float, \
wopen float, \
wio float, \
wclose float, \
wtotal float, \
write float, \
primary key(filename) \
)'
conn.execute(tbl)
except:
print("could not create db")
for filename in glob.glob(folder + "/*"):
#print("Parsing " + filename)
parse(filename, conn)
conn.commit()
conn.close()