Batch script
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eugen.betke
parent
d61797d288
commit
116ba14b0d
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#!/bin/bash
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#SBATCH -w isc17-c[02,03,04,05,08,09,10,12,14,23]
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#SBATCH --dependency=singleton
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#SBATCH --output=slurm/slurm-%j.txt
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#SBATCH --job-name=DDNIME
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##SBATCH -w isc17-c[02-06,08-10,12-14,18]
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#These nodes can be used with DDN IME
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##SBATCH --distribution=block
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SCRIPT="$(readlink -f $0)"
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SCRIPTPATH="$(dirname $SCRIPT)"
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cd "$SCRIPTPATH"
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function die() {
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echo "$1" && exit 1
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}
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function command_exists() {
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type "$1" &> /dev/null;
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}
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export MODULEPATH=/gsfs/betke/software/modules:$MODULEPATH
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#module purge
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#module load ddn/mvapich/3.1.4
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#module load betke/hdf5/1.8.20
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#module load betke/netcdf/4.4.1
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#module load betke/ior/git
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#module load betke/netcdf-bench/git-20171206
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#module list
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module purge
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module load ddn/mvapich/3.1.4
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module load betke/hdf5/1.8.20-ddn
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module load betke/netcdf/4.4.1-ddn
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module load betke/ior/git-ddn
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module load betke/netcdf-bench/git-20171206-ddn
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module list
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type mpiexec 2>&1 || die "mpiexec not found"
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type benchtool 2>&1 || die "benchtool not found"
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#set -x
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IOR="$(which ior)"
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#IOR="/opt/ddn/ior/bin/IOR-mvapich"
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NCBENCH="$(which benchtool)"
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TESTDIR="/ime/isc18/perf"
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#TIMESTAMP=$(date +"%Y%m%d_%H%M%S")
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TIMESTAMP="20171218_162418"
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LUSTRE_TESTFILE="/esfs/isc18/perf/file"
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FUSE_TESTFILE="/ime/isc18/perf/file"
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IME_TESTFILE="ime:///esfs/isc18/perf/file"
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OUTPUTDIR="./output"
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SLURM_OUTPUT="slurm/slurm-%j.txt"
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#set +x
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WORKDIR="/gsfs/betke/git/manny-benchmark/scripts"
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cd $WORKDIR
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PROG_ARR=("$IOR")
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#PROG_ARR=("$NCBENCH" "$IOR")
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#NN_ARR=(1 2 4 8 12 16)
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NN_ARR=(10 8 6 4 2 1)
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#NN_ARR=(16 12 8 4 2 1)
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PPN_ARR=(8 6 4 2 1)
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TIME_ARR=(100)
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XGEOM_ARR=($((8 * 2)))
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YGEOM_ARR=($((8 * 8)))
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#ZGEOM_ARR=(4 25 256 2560)
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ZGEOM_ARR=(2560 256 25 4)
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TYPE_ARR=("ind" "coll") #( "ind" "coll" )
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IFACE_ARR=("ime" "mpio" "posix")
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FS_ARR=("ime" "lustre" "fuse")
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CHUNKED_ARR=("none" "-c=auto") #("none") # ( "none" "-c=auto" )
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UNLIMITED_ARR=("none" "-u") # ( "none" "-u" )
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#FILL_VALUE_ARR=("-F" "none") # "-F" )
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FILL_VALUE_ARR=("none") # "-F" )
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#####
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SLURMDIR="$(dirname $SLURM_OUTPUT)"
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mkdir -p $SLURMDIR
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TDIR="$(dirname $IME_TESTFILE)"
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srun --nodes=1 --ntasks=1 mkdir -p $TDIR
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mkdir -p $OUTPUTDIR
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function runTest(){
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local l_command="$1"
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local l_out="$2"
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local l_testdir="$3"
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local l_stripes="$4"
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local l_debug="$5"
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local l_wml="$(which mpiexec) -ppn 1 -np 1"
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local l_timestamp=$(date +"%Y%m%d_%H%M%S")
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echo "create $l_out"
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touch $l_out
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echo "${l_timestamp}" &>> $l_out
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echo "FILENAME $l_out" &>> $l_out
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rm -rf $l_testdir
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mkdir -p $l_testdir
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lfs setstripe -c $l_stripes $l_testdir
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echo "$l_command" | tee -a $l_out
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#eval "$l_command >> $l_out 2>&1"
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$l_command >> $l_out 2>&1
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lfs getstripe $l_testdir >> $l_out 2>&1
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rm -rf $l_testdir
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}
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#TESTFILE=$(makeOutputName $OUTPUTDIR $NN $PPN $T $X $Y $Z $TYPE $CHUNKED $UNLIMITED $FILLVALUE)
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DEBUG=false
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function makeOutputName() {
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local l_outdir="$1"
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local l_tag="$2"
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local l_count="${3}"
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local l_prog="$4"
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local l_nn="$5"
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local l_ppn="$6"
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local l_t="$7"
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local l_x="$8"
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local l_y="$9"
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local l_z="${10}"
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local l_type="${11}"
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local l_iface="${12}"
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local l_fs="${13}"
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local l_c="${14}"
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local l_u="${15}"
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local l_f="${16}"
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[[ "${l_c}" == "none" ]] && l_c="notset" || l_c="auto"
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[[ "${l_u}" == "none" ]] && l_u="notset" || l_u="set"
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[[ "${l_f}" == "none" ]] && l_f="notset" || l_f="set"
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local l_out="${l_outdir}/COUNT:${l_count}#TAG:${l_tag}#PROG:${l_prog}#NN:${l_nn}#PPN:${l_ppn}#TYPE:${l_type}#IFACE:${l_iface}#FS:${l_fs}#CHUNKED:${l_c}#FILLED:${l_f}#UNLIMITED:${l_u}#output:$l_t:${l_x}:${l_y}:${l_z}.txt"
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echo ${l_out}
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}
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for COUNT in $(seq 3); do
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for PROG in ${PROG_ARR[@]}; do
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for NN in ${NN_ARR[@]}; do
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for PPN in ${PPN_ARR[@]}; do
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for T in ${TIME_ARR[@]}; do
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for X in ${XGEOM_ARR[@]}; do
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for Y in ${YGEOM_ARR[@]}; do
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for Z in ${ZGEOM_ARR[@]}; do
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for TYPE in ${TYPE_ARR[@]}; do
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for IFACE in ${IFACE_ARR[@]}; do
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for FS in ${FS_ARR[@]}; do
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for CHUNKED in ${CHUNKED_ARR[@]}; do
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for UNLIMITED in ${UNLIMITED_ARR[@]}; do
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for FILL_VALUE in ${FILL_VALUE_ARR[@]}; do
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BENCHFILE=$(makeOutputName $OUTPUTDIR $TIMESTAMP $COUNT $(basename $PROG) $NN $PPN $T $X $Y $Z $TYPE $IFACE $FS ${CHUNKED} ${UNLIMITED} ${FILL_VALUE})
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STRIPES=$(($NN * 2))
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if [ ! -e "${BENCHFILE}" ]; then
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if [[ $TYPE == "ind" && $UNLIMITED == "-u" ]]; then
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echo "skip ${BENCHFILE}, because -t=ind and -u are not supported"
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else
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#HNUM_ARR=("02" "03" "04" "05" "06" "08" "09" "10" "12" "13" "14" "23")
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#HNUM_ARR=("02" "03" "04" "05" "06" "08" "09" "10" "11" "14" "23" "12")
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#HNUM_ARR=("${HNUM_ARR[@]/#/isc17-c}")
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#HOST_LIST="$(IFS=, ; echo "${HNUM_ARR[*]}")"
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#HOST_LIST=isc17-c02,isc17-c03,isc17-c04,isc17-c05,isc17-c06,isc17-c08,isc17-c09,isc17-c10,isc17-c12,isc17-c13,isc17-c14,isc17-c18
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#HOST_LIST=isc17-c02,isc17-c03,isc17-c04,isc17-c05,isc17-c06,isc17-c08,isc17-c09,isc17-c10,isc17-c11,isc17-c12,isc17-c14,isc17-c23
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HOST_LIST=isc17-c02,isc17-c03,isc17-c04,isc17-c05,isc17-c08,isc17-c09,isc17-c10,isc17-c12,isc17-c14,isc17-c23
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#http://www.prace-ri.eu/best-practice-guide-generic-x86-html/
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#"$ADAPTIVE " \
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#"-genv IM_MONITOR_FILE /dev/shm/native_mon.%p " \
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#"-genv IM_CLIENT_NET_BUFFERS 32 " \
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WLM="$(which mpiexec) -ppn ${PPN} -np $(($NN*$PPN)) -hosts $HOST_LIST "
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WLM+="-genv IM_CLIENT_NET_BUFFERS 32 "
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WLM+="-genv MV2_NUM_HCAS 1 "
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WLM+="-genv MV2_CPU_BINDING_LEVEL core "
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WLM+="-genv MV2_CPU_BINDING_POLICY scatter "
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WLM+="-genv MV2_SHOW_CPU_BINDING 1 "
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#WLM="srun --nodes=$NN --ntasks-per-node=$PPN --ntasks=$(($NN*$PPN))"
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#WLM="mpiexec --allow-run-as-root -npernode $(($NN*$PPN)) -N $PPN" # for DDN IME system
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#WLM="/opt/ddn/mvapich/bin/mpiexec.hydra -ppn $PPN -np $(($PPN*$NN)) -hosts `nodeset -S "," -e manny[600-607]`"
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case "$PROG" in
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$IOR)
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echo "RUN $IOR"
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#set -x
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B=$(($X*$Y*$Z*4))
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S=$T
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if [[ "none" == "${CHUNKED}" ]]; then
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if [[ "none" == "${UNLIMITED}" ]]; then
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if [[ "none" == "${FILL_VALUE}" ]]; then
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$PARAMS="-e -g -z"
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PARAMS="-e -g"
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if [[ "lustre" == "${FS}" ]]; then
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if [[ "posix" == "${IFACE}" ]]; then
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if [[ "ind" == "${TYPE}" ]]; then
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runTest "$WLM $IOR -s $S -t $B -b $B -o $LUSTRE_TESTFILE $PARAMS -f ./tests/POSIX-individual" "${BENCHFILE}" "$(dirname $LUSTRE_TESTFILE)" "$STRIPES" "$DEBUG"
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fi
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elif [[ "mpio" == "${IFACE}" ]]; then
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if [[ "ind" == "${TYPE}" ]]; then
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runTest "$WLM $IOR -s $S -t $B -b $B -o $LUSTRE_TESTFILE $PARAMS -f ./tests/MPI-shared" "${BENCHFILE}" "$(dirname $LUSTRE_TESTFILE)" "$STRIPES" "$DEBUG"
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fi
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fi
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elif [[ "fuse" == "${FS}" ]]; then
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if [[ "posix" == "${IFACE}" ]]; then
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if [[ "ind" == "${TYPE}" ]]; then
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runTest "$WLM $IOR -s $S -t $B -b $B -o $FUSE_TESTFILE $PARAMS -f ./tests/POSIX-individual" "${BENCHFILE}" "$(dirname $FUSE_TESTFILE)" "$STRIPES" "$DEBUG"
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fi
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elif [[ "mpio" == "${IFACE}" ]]; then
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if [[ "ind" == "${TYPE}" ]]; then
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runTest "$WLM $IOR -s $S -t $B -b $B -o $FUSE_TESTFILE $PARAMS -f ./tests/MPI-shared" "${BENCHFILE}" "$(dirname $FUSE_TESTFILE)" "$STRIPES" "$DEBUG"
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fi
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fi
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elif [[ "ime" == "${FS}" ]]; then
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if [[ "ime" == "${IFACE}" ]]; then
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if [[ "ind" == "${TYPE}" ]]; then
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runTest "$WLM /opt/ddn/ior/bin/IOR-mvapich -s $S -t $B -b $B -o $IME_TESTFILE $PARAMS -a "IM"" "${BENCHFILE}" "$TESTDIR" "$STRIPES" "$DEBUG"
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fi
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fi
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fi
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fi
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fi
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fi
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#runTest "$WLM $IOR -a IM -s $S -t $B -b $B -o ime://$TESTFILE -e -f ./tests/MPI-shared" "shared" "${BENCHFILE}" "$TESTDIR" "$STRIPES" "$DEBUG"
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#set +x
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;;
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$NCBENCH)
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echo "RUN $NCBENCH"
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#set -x
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PARAMS=""
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if [[ "none" != "${CHUNKED}" ]]; then
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PARAMS+="${CHUNKED} "
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fi
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if [[ "none" != "${UNLIMITED}" ]]; then
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PARAMS+="${UNLIMITED} "
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fi
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if [[ "none" != "${FILL_VALUE}" ]]; then
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PARAMS+="${FILL_VALUE} "
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fi
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if [[ "lustre" == "${FS}" ]]; then
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if [[ "mpio" == "${IFACE}" ]]; then
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runTest "$WLM $NCBENCH -f=$LUSTRE_TESTFILE -n=$NN -p=$PPN -d=$T:$(($X*$NN)):$(($Y*$PPN)):$Z -w -r -t=$TYPE $PARAMS" "${BENCHFILE}" "$(dirname ${LUSTRE_TESTFILE})" "$STRIPES" "$DEBUG"
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fi
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elif [[ "fuse" == "${FS}" ]]; then
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if [[ "mpio" == "${IFACE}" ]]; then
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runTest "$WLM $NCBENCH -f=$FUSE_TESTFILE -n=$NN -p=$PPN -d=$T:$(($X*$NN)):$(($Y*$PPN)):$Z -w -r -t=$TYPE $PARAMS" "${BENCHFILE}" "$(dirname ${FUSE_TESTFILE})" "$STRIPES" "$DEBUG"
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fi
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fi
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#set +x
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;;
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*)
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echo "$PROG not supported"
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exit 1
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esac
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fi
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else
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echo "skip $(readlink -f $BENCHFILE), already exists"
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fi
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#exit
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done
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done
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done
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done
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done
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done
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done
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done
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done
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done
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done
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done
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done
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done
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exit 0
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